RNA viruses are masters of evolution; rapidly adapting to new environments, evading immune responses and side-stepping anti-viral therapies. Next-generation sequencing (NGS) has transformed our ability to probe and characterize the biology and evolution of viruses, and is still a burgeoning field. From lab-adapted viral strains to on-going pandemics, NGS allows us to map with exquisite accuracy the variations and mutations that define a viral population. By characterizing the changes in these variations over time, we may unpick the processes that underpin viral evolution and progression.
In my lab, we combine molecular and cellular virology, next-generation sequencing and computational biology to study well-controlled and highly characterized model systems such as Flock House Virus and Cricket Paralysis Virus, as well as human pathogens including Human Rhinoviruses and HIV. We study systems ranging from controlled cell culture, through animal models, into clinical specimens. This multi-strata approach is aimed at gaining a molecule's-eye view of the mechanisms of RNA replication and recombination in order to understand virus evolution on a population scale.
Publications/Creative Works
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